PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla001733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 178aa    MW: 19706.4 Da    PI: 9.5082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla001733genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1865115155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr p   + r  r +lg+f ta +Aa a+++a+++++g
  Cla001733  65 CNYRGVRQRT-WGKWVAEIRAP---N-RgSRLWLGTFPTAIDAALAYDEAARAMYG 115
                56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1265115IPR001471AP2/ERF domain
CDDcd000181.87E-3165124No hitNo description
PROSITE profilePS5103221.49666123IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2166123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-3266124IPR001471AP2/ERF domain
SMARTSM003803.9E-3666129IPR001471AP2/ERF domain
PRINTSPR003677.7E-106778IPR001471AP2/ERF domain
PRINTSPR003677.7E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MPKLEKLQTR RPGSLSVAET LAKWKDYNDH LDSCNDEAKL ARRVPAKGSK KGCMKGKGGP  60
ENMRCNYRGV RQRTWGKWVA EIRAPNRGSR LWLGTFPTAI DAALAYDEAA RAMYGTLARL  120
NFPNISIPTL LKEKESPTKD SPEIKRSSIS FLGSTSLCLS SESTITSDHS EDCAVEDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1966123563ATERF1
3gcc_A7e-1966123563ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456436.11e-94PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotA2WL194e-50DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF74e-50DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0A0KB021e-91A0A0A0KB02_CUCSA; Uncharacterized protein
STRINGPGSC0003DMT4000615417e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-33DRE-binding protein 2A